​Lab Meeting

Our lab meeting will be held every Monday 9am in East Campus.

Every week, one student will give a "formal" presentation on her/his project, and four students will lead the discussion of a paper each.

Presenters and discussion leaders must upload the files to the CAU Cloud.

If you have more questions, please contact Zijing Zhang. 

2019.05.23

Presentation: Jiaqiang Wu

Journal Club: Qinglin Wang, Zijing Zhang, Qina Cao

• Robertson et al. 2019 Comparison of Co-housing and Littermate Methods for Microbiota Standardization in Mouse Models. Cell Reports 

• Holder et al. 2018 Dietary Emulsifiers Consumption Alters Anxiety-Like and Social-Related Behaviors in Mice in A Sex-Dependent Manner. Scientific Reports 

• Gao et al. 2018 Antibiotics-Induced Modulation of Large Intestinal Microbiota Altered Aromatic Amino Acid Profile and Expression of Neurotransmitters in the Hypothalamus of Piglets. 
  Journal of Neurochemistry 

2019.05.16

Presentation: Xiaohuan Mu, Haolin Qu

Journal Club: Haoyu Lang, Jieni Wang, Huihui Sun, Tianjin Cui

• Wang et al. 2019 Assessing the Viability of Transplanted Gut Microbiota by Sequential Tagging with D-Amino Acid-Based Metabolic Probes. Nature Communications 

• Pacheco et al. 2018 Costless Metabolic Secretions as Drivers of Interspecies Interactions in Microbial Ecosystems Interspecies Interactions in Microbial Ecosystems. Nature Communications -018-07946-9

• Ronda et al. 2018 Metagenomic Engineering of the Mammalian Gut Microbiome in situ.
  Nature Methods 

• Maori et al. 2019 A Transmissible RNA Pathway in Honey Bee. Cell Reports 

2019.05.10

Presentation: Huijuan Duan

Journal Club: Qinglin Wang, Zijing Zhang, Jiaqiang Wu, Qina Cao

• Saffouri et al. 2019 Small Intestinal Microbial Dysbiosis Unerlies Symptoms Associated with Functional Gastrointestinal Disorders. Nature Communication 

• Baker et al. 2018 Horizontal Antimicrobial Resistance Transfer Drives Epidemics of Multiple Shigella Species.
  Nature Communication 

• Han et al. 2018 Agricultural Risk fACTORS influence Microbial Ecology in Honghu Lake.                                
  Genomics Proteomics Bioinformatics 

• Wong et al. 2019 Early Life Stress Disrupts Intestinal Homeostasis via NGF-TrkA Signaling.
  Nature Communication 

2019.04.24

Presentation: Tianjin Cui

Journal Club: Qinglin Wang, Jieni Wang, Huihui Sun, Xiaohuan Mu

• Schulfer et al. 2019 The impact of Early-Life Sub-therapeutic Antibiotic Treatment (STAT) on Excessive Weight Is Robust despite Transfer Microbes. ISME 

• Hochstein et al. 2019 The Deposit Feeder Capitella telex Has A Unique and Relatively Complex Microbiome Likely Supporting Its Ability to Degrade Pollutants. 
  Science of the Total Environment https://doi.org/10.1016/j.scitotenv.2019.03.255

• Baker et al. 2019 Klebsiella and Providencia Emerge as Long Survivors Following Long-Term Starvation of Oral Microbiota. PNAS 

• Guo et al. 2018 Metagenomic Study Suggests That the Gut Microbiota of the Giant Panda (Ailuropoda melanoleuca) May Not Be Specialized for Fiber Fermentation. Frontiers in Microbiology 

2019.04.18

Presentation: Qina Cao

Journal Club: Haoyu Lang, Zijing Zhang, Jiaqiang Wu, Huijuan Duan

• Labed et al. 2018 Intestinal Epithelial Wnt Signaling Mediates Acetylchline-Triggered Host Defense against Infection. Immunity 

• Knowles et al. 2019 Species Identity Dominates over Environment in Shaping the Microbiota of Small Mammals.
  Ecology Letters https://doi.org/10.1111/ele.13240

• Poole et al. 2019 Human Salivary Amylase Gene Copy Number Impacts Oral and Gut Microbiomes.                                
  Cell Host & Microbe 

• Fouhy et al. 2019 Perinatal Factors Affect the Gut Microbiota up to Four Years after Birth.
  Nature Communication 

2019.04.11

Presentation: Jieni Wang

Journal Club: Haoyu Lang, Tianjin Cui, Huihui Sun, Xiaohuan Mu

• Martino et al. 2018 Bacterial Adaptation to the Host's Diet Is a Key Evolutionary Force Shaping Drosophila-Lactobacillus Symbiosis. Cell Host & Microbe 

• Velazquez et al. 2019 Endogenous Enterobacteriaceae Underlie Variation in Susceptibility to Salmonella Infection. Nature Microbiology 

• Ross et al. 2018 Comprehensive Skin Microbiome Analysis Reveals the Uniqueness of Human Skin and Evidence for Phylosymbiosis within the Class Mammalia. PNAS 

• Brito et al. 2019 Transmission of Human-Associated Microbiota along Family and Social Networks.
  Nature Microbiology 

2019.04.05

Presentation: Zijing Zhang

Journal Club: Qinglin Wang, Qina Cao, Jiaqiang Wu, Huijuan Duan

• Goldford et al. 2018 Emergent Simplicity in Microbial Community Assembly. Science 

• Iszatt et al. 2019 Environmental Toxicants in Breast Milk of Norwegian Mothers and Gut Bacteria Composition and Metabolites in Their Infant at 1 Month. Microbiome 

• Chen et al. 2019 Drosophila Histone Demethylase KDM5 Regulates Social Behavior through Immune Control and Gut Microbiota Maintenance. Cell Host & Microbe 

• Zeevi et al. 2019 Structural Variation in the Gut Microbiome Associates with Host Health.
  Nature 

2019.03.20

Presentation: Huihui Sun

Journal Club: Haoyu Lang, Tianjin Cui, Jieni Wang, Xiaohuan Mu

• Jacobson et al. 2018 A Gut  Commensal-Produced Metabolite Mediates Colonization Resistance to Salmonella Infection. Cell Host & Microbe 

• Litvak et al. 2019 Commensal Enterobacteriaceae Protect against Salmonella Colonization through Oxygen Competition. Cell Host & Microbe 

• Kniazeva et al. 2019 Rhizobium Induced DNA Damage in Caenorhabditis elegant Intestinal cells. 
  PNAS 

• Regan et al. 2018 Characterisation of the British Honey Bee Metagenome.
  Nature Communications 

2019.03.14

Presentation: Qinglin Wang

Journal Club: Zijing Zhang, Qina Cao, Jiaqiang Wu, Huijuan Duan

• Valles-Colomer et al. 2018 The Neuroactive Potential of the Human Gut Microbiota in Quality of Life and Depression.     Nature Microbiology 

• De Filippis et al. 2019 Distinct Genetic and Functional Traits of Human Intestinal Prevotella copra Strains Are Associated with Different Habitual Diets. Cell Host & Microbe 

• Augustin et al. 2017 A Secreted Antibacterial Neuropeptide Shapes the Microbiome of Hydra. 
  Nature Communications 

• Zhou et al. 2019 Selective Colonization Ability of Human Fecal Microbes in Different Mouse Gut Environments. 
  ISME

2019.03.07

Presentation: Haoyu Lang

Journal Club: Tianlin Cui, Xiaohuan Mu, Jieni Wang, Huihui Sun

• Guittar et al. 2019 Trait-Based Community Assembly and Succession of the Infant Gut Microbiome.                                   Nature Communications 

• Jiang et al. 2019 Invertible Promoters  Mediate Bacterial Phase Variation, Antibiotic Resistance, and Host Adaption in the Gut. Science 

• Kim et al. 2019 Genomic Insights from Monoglobus pectinilyticus: A Pectin-Degrading Specialist Bacterium in the Human Colon. ISME 

• Ellegaard et al. 2019 Genomic Diversity Landscape of the Honey Bee Gut Microbiota. Nature Communications

2019.01.16

Journal Club: Tianlin Cui, Zijing Zhang, Qina Cao, Qinglin Wang

• Trible et al. 2017 Orco Mutagenesis Causes Loss of Antennal Lobe Glomeruli and Impaired Social Behavior in Ants.     Cell

• Mets et al. 2018 Regulation of Acetate Metabolism and Coordination with the TCA Cycle via A Processed Small RNA.  PNAS 

• Moeller et al. 2017 Dispersal Limitation Promotes the Diversification of the Mammalian Gut Microbiota.                     PNAS 

• Gospocic et al. 2017 The Neuropeptide Corazonin Controls Social Behavior and Identity in Ants.                                       Cell

2019.01.09

Presentation: Tianlin Cui

Journal Club: Jieni Wang, Huihui Sun, Haoyu Lang

• Fu et al. 2018 Tracking Vibrio cholerae Cell-Cell Interactions during Infection Reveals Bacterial Population Dynamics within Intestinal Microenvironments. Cell Host & Microbe 

• Ruppé et al. 2019 Prediction of Intestinal Resistome by A Three-Dimensional Structure-Based Method.                     Nature Microbiology  

• Waldschmitt et al. 2018 The Regenerating Family Member 3 β Instigates IL- 17A-Mediated Neutrophil Recruitment Downstream of NOD1/2 Signalling for Controlling Colonisation Resistance Independently of Microbiota Community Structure. Mucosai Immunity 

2019.01.02

Presentation: Qina Cao

Journal Club: Zijing Zhang, Jiaqiang Wu, Qinglin Wang

• Motta et al. 2018 Glyphosate Perturb the Gut Microbiota of Honey Bees. PNAS 

• Kolodny et al. 2018 Coordinated Change at the Colony Level in Fruit Bat Fur Microbiomes through Time for. Nature Ecology & Evolution  

• Robinson et al. 2018 Experimental Bacterial Adaptation to the Zebrafish Gut Reveals A Primary Role for Immigration. PLOS Biology 

2018.12.19

Presentation: Jieni Wang

Journal Club: Tianlin Cui, Huihui Sun

• Strandwitz et al. 2018 GABA-Modulating Bacteria of the Human Gut Microbiota.
  Nature Microbiology  

• Jang et al. 2018 Evidence for Interplay among Antibacterial-Induced Gut Microbiota Disturbance, Neuro-Inflammation, and Anxiety in Mice. Mucosal Immunology  

2018.12.19

Presentation: Zijing Zhang

Journal Club: Qinglin Wang, Jiaqiang Wu, Qina Cao

• Jha et al. 2018 Gut Microbiome Transition across A Lifestyle Gradient in Himalaya.
  PLOS Biology  

• Gould et al. 2018 Microbiome Interactions Shape Host Fitness. PNAS  

• Suarez et al. 2018 Gut Vagal Sensory Signaling Regulates Hippocampus Function through Multi-Order Pathways.         Nature Communication 

2018.12.12

Journal Club: Tianlin Cui, Haoyu Lang, Huihui Sun

• Beardmore et al. 2018 Drug-Mediated Metabolic Tipping between Antibiotic Resistant States in A Mixed-Species Community. Nature Ecology & Evolution  

• Kokou et al. 2018 Host Genetic Selection for Cold Tolerance Shapes Microbiome Composition and Modulates Its Response to Temperature. ELife  

• Perofsky et al. 2018 Terrestriality and Bacterial Transfer: A Comparative Study of Gut Microbiomes in Sympatric Malagasy Mammals. ISME 

2018.12.05

Presentation: Qinglin Wang

Journal Club: Qina Cao, Jieni Wang, Jiaqiang Wu

• Reese et al. 2018 Microbial Nitrogen Limitation in the Mammalian Large Intestine.
  Nature Microbiology  

• Olson et al. 2018 The Gut Microbiota Mediates the Anti-Seizure Effects of the Ketogenic Diet. Cell  

• Tso et al. 2018 Experimental Evolution of A Fungal Pathogen into A Gut Symbiont.           Science 

2018.11.28

Presentation: Huihui Sun

Journal Club: Zijing Zhang, Tianlin Cui, Haoyu Lang

• Solden et al. 2018 Interspecies Cross-Feeding Orchestrates Carbon Degradation in the Rumen Ecosystem.
  Nature Microbiology  

• Connolly et al. 2018 Host-Associated Niche Metabolism Controls Enteric Infection through Fine-Tuning the Regulation of Type 3 Secretion. Nature Communications  

• Pifer et al. 2018 Redox, Amino Acid, and Fatty Acid Metabolism Intersect with Bacterial Virulence in the Gut.                    PNAS 

2018.11.14

Presentation: Jiaqiang Wu

Journal Club: Qinzhi Su, Jieni Wang, Qina Cao, Qinglin Wang

• Stewart et al. 2018 Temporal Development of the Gut Microbiome in Early Childhood from the TEDDY Study.
  Nature  

• Bäumler et al. 2016 Interactions Between the Microbiota and Pathogenic Bacteria in the Gut.
  Nature 

• Dura ́ n et al. 2018 Microbial Interkingdom Interactions in Roots Promote Arabidopsis Survival.
  Cell

• Walters et al. 2018 Sarcosine Is Uniquely Modulated by Aging and Dietary Restriction in Rodents and Humans.
  Cell Report 

2018.11.05

Presentation: Haoyu Lang

Journal Club: Zijing Zhang, Huihui Sun, Chenyi Li, Tianlin Cui

• Schretter et al. 2018 A Gut Microbial Factor Modulates Locomotor Behaviour in Drosophila. Nature 

• Goyal et al. 2018 Multiple Stable States in Microbial Communities Explained by the Stable Marriage Problem. ISME 

• Wang et al. 2018 Antiepileptic Drug Carbamazepine Promotes Horizontal Transfer of Plasmid-Borne Multi-Antibiotic Resistance Genes Within and Across Bacterial Genera. ISME 

• Bueno et al. 2018 Anaerobic Nitrate Reduction Divergently Governs Population Expansion of the Enteropathogen Vibrio Cholerae. Nature Microbiology 

2018.10.31

Presentation: Qina Cao

Journal Club: Jiaqiang Wu, Qinglin Wang, Qinzhi Su, Jieni Wang

• Leventhal et al. 2018 Strain-Level Diversity Drives Alternative Community Types in Millimetre-Scale Granular Biofilms. Nature Microbiology 

• Vandeputte et al. 2017 Quantitative Microbiome Profiling Links Gut Community Variation to Microbial Load. Nature 

• Han et al. 2018 A Neural Circuit for Gut-Induced Reward. Cell 

• Pärnänen et al. 2018 Maternal Gut and Breast Milk Microbiota Affect Infant Gut Antibiotic Resistome and Mobile Genetic Elements. Nature Communications 

2018.10.22

Presentation: Tianlin Cui, Qing Guo

2018.10.15

Presentation: Zijing Zhang

Journal Club: Huihui Sun, Chenyi Li, Haoyu Lang, Qina Cao

• Lundsgaard et al. 2019 Mechanisms Preserving Insulin Action during High Dietary Fat Intake. Cell Metabolism 

• Sharma et al. 2018 Mannose Alters Gut Microbiome, Prevents Diet- Induced Obesity, and Improves Host Metabolism. Cell Reports 

• Piewngam et al. 2018 Pathogen Elimination by Probiotic Bacillus via Signalling Interference. Nature 

• Ju et al. 2018 Wastewater Treatment Plant Resistomes Are Shaped by Bacterial Composition, Genetic Exchange, and Upregulated Expression in The Effluent Microbiomes. ISME 

2018.10.08

Presentation: Jieni Wang

Journal Club: Jiaqiang Wu, Qinglin Wang, Qinzhi Su, Tianlin Cui

• Zierer et al. 2018 The Fecal Metabolome as A Functional Readout of The Gut Microbiome. Nature Genetics 

• Pärnänen et al. 2018 Maternal Gut and Breast Milk Microbiota Affect Infant Gut Antibiotic Resistome and Mobile Genetic Elements. Nature Communications 

• Adamowicz et al. 2018 Cross-Feeding Modulates Antibiotic Tolerance in Bacterial Communities. ISME Journal 

• Martı ́nez et al. 2018 Experimental Evaluation of The Importance of Colonization History in Early-Life Gut Microbiota Assembly. ELife 

2018.09.24

Presentation: Huihui Sun

Journal Club: Jieni Wang, Jiaqiang Wu, Zijing Zhang

• Suez et al. 2018 Post-Antibiotic Gut Mucosal Microbiome Reconstitution Is Impaired by Probiotics and Improved by Autologous FMT. Cell 

• Zmora et al. 2018 Personalized Gut Mucosal Colonization Resistance to Empiric Probiotics Is Associated with Unique Host and Microbiome Features. Cell 

• Light et al. 2018 A Flavin-Based Extracellular Electron Transfer Mechanism in Diverse Gram-Positive Bacteriasoil Viral Ecology along A Permafrost Thaw Gradient. Nature 

2018.09.17

Presentation: Jiaqing Wu, Haoyu Lang

Journal Club: Tianlin Cui, Qinan Cao, Chenyi Li, Qinzhi Su

• Sanchez et al. 2018 Cooperative Metabolic Adaptations in the Host Can Favor Asymptomatic Infection and Select for Attenuated Virulence in an Enteric Pathogen. Cell 

• Deschasaux et al. 2018 Depicting the Composition of Gut Microbiota in A Population with Varied Ethnic Origins but Shared Geography. Nature Medicine 

• Emerson et al. 2018 Host-Linked Soil Viral Ecology along A Permafrost Thaw Gradient. Nature Microbiology

• Fulde et al. 2018 Neonatal Selection by Toll-Like Receptor 5 Influences Long-Term Gut Microbiota Composition. Nature